Integrated Web-based Single-cell Transcriptome Atlas of the Skin

Start by selecting specific single-cell RNA-sequencing dataset below. Note that in all datasets only significantly expressed genes are searchable.


Mouse Embryonic Skin

Day E13.5

From: Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis Developmental Cell 2019

Mouse Embryonic Skin

Day E14.5

From: Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis Developmental Cell 2019

Mouse Epidermis

Newborn

From: Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states Nature Communications 2021

Mouse Skin, telogen phase

Postnatal day 49

From: Defining epidermal Basal Cell States During Sking Homeostasis and Wound Healing Using Single-Cell Transcriptomics Cell Reports 2020

Mouse Skin Wound

Day 4 post wounding

From: Defining epidermal Basal Cell States During Sking Homeostasis and Wound Healing Using Single-Cell Transcriptomics Cell Reports 2020

Mouse Skin Wound

Day 12 post wounding

From: Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. Nature Communications 2019

Mouse Skin Wound

Day 18 post-wounding

From: Phagocytosis of Wnt inhibitor SFRP4 by late wound macrophages drives chronic Wnt activity forfibrotic skin healing Science Advances 2020

Human Hair Follicle

Scalp skin minigrafts, anagen

From: Defining Transcriptional Signatures of Human Hair Follicle Cell State.
J Invest Dermatol 2019

Human Epidermis

Neonatal foreskin

From: Single cell transcriptomics of human epidermis identifies basal stem cell transition states
Nature Communications 2020